The Clone Wars Episode Guide: Blue Shadow Virus

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February 13, 2009

Episode Air No.: 17 (Season 1; Episode 17)
Original Air Date: February 13, 2009
Production No.: 126 (Season 1; Episode 26)

Written by Craig Titley
Supervising Writer: Scott Murphy
Series Writer: Henry Gilroy
Directed by Giancarlo Volpe

Key Characters: Padmé Amidala; Jar Jar Binks; Anakin Skywalker; Ahsako Tano; Obi-Wan Kenobi; Dr. Nuvo Vindi.

Key Locales: Naboo

Catherine Taber as Padmé Amidala
Matt Lanter as Anakin Skywalker
James Arnold Taylor as Obi-Wan Kenobi
Ashley Eckstein as Ahsoka Tano
BJ Hughes as Jar Jar Binks
Michael York as Dr. Nuvo Vindi
James Mathis III as Captain Typho
Dee Bradley Baker as clone troopers
Anthony Daniels as C-3PO
Gwendoline Yeo as Peppi Bow
Phil LaMarr as Tactical Droid
Tom Kane as Yoda/Narrator
Matthew Wood as the battle droids
Jameelah McMillan as Queen Neeyutnee
David Acord as the assistant droid

Episode Brief: Padmé and Jar Jar are captured while searching for a secret Separatist bio-weapons lab, sparking Anakin, Obi-Wan and Ahsoka to try and save their friends and halt the release of a deadly virus.

Full Synopsis

"Fear is a disease; hope is its only cure."

Battle droids on Naboo! As the
Separatist rebellion rages through
the galaxy, even peaceful planets are
threatened. Following the discovery
of Separatist droids wandering the grassy
wasteland, Naboo is once again on
high alert. Fearing their home is facing
another invasion, Senator Amidala and
Representative Binks race to Naboo to
assess the situation. Meanwhile, near
the Gungan swamplands, an even graver
threat is about to be discovered....


The gleaming Naboo yacht lands within the cavernous Royal Hangar at the Theed Palace on Naboo. Awaiting its arrival are Queen Neeyutnee, the current Naboo monarch, and Captain Typho. Senator Padmé Amidala, Jar Jar and C-3PO hurry out of the craft and meet with the queen, who reports that Naboo security forces discovered a small number of battle droids in the plains. Neeyutnee wants Amidala to inform the Senate that Naboo is threatened, but Amidala knows the Senate will require more proof.

They retire to a droid repair room, where the fragments of battle droids and a tactical droid are under examination. Amidala finds it odd that the droid remains have such thick mud on them since they were supposedly found in the grasslands. Jar Jar is distracted. He smells something that causes him to poke around the banks of spare parts. Meanwhile, a medical droid begins a robolobotomy on the tactical droid, poking around its memory banks to see what it can find.

The droid springs to life, though its photoreceptors are not functional. At Padmé's prompting, C-3PO lies to the droid, telling it that it is aboard a Separatist ship. Threepio tries to fish out any information about the droid's assignment on Naboo. It utters something about a virus, specifically about a leak of a small amount of virus from a secret laboratory. The droid comes to realize it has been duped and clams up. At the same time, Jar Jar has been chasing a bright blue slug-beetle that has crawled out of one of the battle droid shells, and clumsily knocks over several shelves of spare parts. The chaos litters debris everywhere, and disrupts the robolobotomy, shorting out the tactical droid.

Jar Jar humbly apologizes. He explains that the tasty slug-beetle is one of his favorite delicacies, and it can only be found in one place on Naboo -- under the perlote tree in the eastern swamps. Jar Jar has unwittingly pointed the way to where the secret laboratory might be.

The Naboo contact the Jedi Council, informing Yoda and Mace Windu of their discovery. Yoda agrees to dispatch two Jedi to investigate. Senator Amidala recommends Generals Skywalker and Kenobi. Yoda concurs. Padmé is determined to locate the laboratory.

Out the Naboo plains, a shaak wrangler named Peppi Bow leads her herd to a river to drink. The shaaks at the stream suddenly collapse and die. Bow is distressed. The river has been poisoned.

A Naboo scout carrier soars over the plains towards the eastern swamps. It sets down near the river, near the dead shaaks. Padmé and Jar Jar emerge in full bio-hazard suits and examine the dead animals. Peppi, unaware of their intentions, attacks them with her electropole. She yanks off Jar Jar's helmet, and is surprised to see a Gungan underneath. Padmé holds her at gunpoint, trying to get her to calm down. Jar Jar panics without his helmet, but Peppi explains that whatever killed her shaaks isn't airborne. The poison is in the water.

Padmé explains they are trying to make their way to the perlote trees. Realizing their intentions are pure, Peppi volunteers to guide Padmé and Jar Jar, but Padmé tells her to stay here. It's too dangerous. Amidala will dispatch Naboo guards to take her back home.

Later, in the thick of the eastern swamps, Padmé and Jar Jar look for anything out of the ordinary. A stalk-mounted photoreceptor emerging from the swamp ground watches them. Observing them from underground is the strange Dr. Nuvo Vindi, the diabolical mastermind behind this Separatist plot. Vindi orders battle droids to the surface to capture these interlopers.

Jar Jar's bumbling uncovers a metal surface beneath the swamp soil -- it appears to be a hatch. Padmé radios Captain Typho, requesting a geo-scan of coordinates SP127. Battle droids suddenly emerge from the swamps and hold Jar Jar and Padmé at gunpoint.


Jar Jar and Padmé are shackled and led into the underground laboratory where they are confronted by Dr. Vindi. The unhinged genius declares that he is creating life. He stands before a shielded cabinet filled with small vials of glowing blue liquid, and announces the return of the infamous Blue Shadow Virus, a deadly plague wiped from the galaxy generations ago. Vindi has cultivated it once more. Furthermore, he has created an airborne version of the virus -- no longer is it contained only to water. Placed within bombs, the gaseous virus is now an incredibly potent weapon.

To Vindi's demented way of thinking, the eradication of the virus was tantamount to genocide. The thousands upon thousands of multicellular organisms spreading war throughout the galaxy are the real plague, and they should not be afforded any superiority.

A Republic gunship lands at Theed palace, and Obi-Wan Kenobi, Ahsoka and Anakin Skywalker emerge. They are met by Typho, who reports that Padmé has gone into the swamps to investigate the outbreak. Anakin is alarmed at this news. Typho introduces Peppi Bow, the last person to have seen Padmé and Jar Jar. Anakin dispatches Ahsoka to accompany Peppi in the search for Padmé.

Typho briefs the Jedi; the Naboo technicians did further robolobotomies on the battle droids, uncovering a holographic image of Doctor Nuvo Vindi, Senior Medic of the Perma families who disappeared about ten years ago. The snippet of holographic recording shows Vindi plotting to release one Blue Shadow virus bomb for each star system.

Typho next reveals the result of the geo-scan of the coordinates that Padmé dispatched. The sensor readings uncovered a huge underground laboratory, with three entry points and a large hangar. Radiation scans also pinpoint a likely location for the bomb assembly room.

The situation is dire -- the weaponization of Blue Shadow Virus could lead to a galaxy-wide plague. The Jedi need to strike quickly, decisively -- and accurately. A careless blast might unleash the virus on Naboo. Obi-Wan pragmatically weighs the risks -- better one planet be poisoned and the plot stopped than thousands of worlds fall victim to the virus.

In the eastern swamps, Peppi and Ahsoka ride shaak-back and find Padmé's scout carrier. They spot Jar Jar and Padmé's tracks in the mud. Suddenly, the periscope emerges underneath Peppi's feet. Both Ahsoka and Peppi try to stay out of the scope's field of vision.

Night has fallen. Ahsoka reports in to an edgy Anakin. There is no sign of the Senator, so Ahsoka assumes she is in the lab. However, the lab entranceways are lined with pressure sensors. There is no way to enter undetected. Obi-Wan orders AHsoka to detonate a bunker-bomb at the south end of the facility; she is cause a distraction that seals off the bomb area while Kenobi and Skywalker come in through the hatches.

A trio of gunships arrive at the hangar, ready to take the Jedi into the swamps. Kenobi will take care of the virus bombs while Anakin is to focus on the doctor. Obi-Wan reminds Anakin to focus on the mission and not be distracted by Padmé.

Back in the swamps, Ahsoka levitates a bunker bomb thermal detonator charge past the periscopes and at the swamp compound's south end and detonates it. Alarms ring throughout the lab. Vindi orders all droids to hatch number one, while he dons a special breather helmet.

The gunships arrive at the swamps. Peppi wants to join in the fight, but Ahsoka tells her to stay behind and make sure no one escapes. Peppi reluctantly agrees.


Clone troopers led by Captain Rex rappel from their gunship into the breach that Ahsoka has made. She joins them. The other two gunships drop thermal detonators at the other hatches. Kenobi leaps into one, while Anakin jumps into another. The droids are concentrated at Ahsoka's entrance; her distraction seems to have worked. With the arrival of droidekas, Ahsoka orders her troops to fall back. Elsewhere, Dr. Vindi's assistant droid has spotted the clone attackers, and runs for it, carrying a Blue Shadow Virus bomb.

Anakin leads his troops to the laboratory, cutting through the airlock doors. He spots Padmé and Jar Jar tied to an electric terminal. Dr. Vindi stands at the terminal's control, warning Skywalker that if he takes another step, the prisoners will be fried. He orders the Republic invaders to drop their weapons. Skywalker has no choice but to comply and tosses his lightsaber to the floor. The clones drop their guns, and the battle droids surround them.

The droidekas harrying Ahsoka's troops are suddenly taken out by the collapse of a tunnel caused by Obi-Wan Kenobi. He has arrived with a special bomb squad team of clone troopers.

Vindi knows he can't hold Anakin for long, so he instead craftily offers the Jedi a choice: capture him, or save his friends. Vindi flips the switch on the electric terminal as he makes a dash for an escape tunnel. Anakin jumps past the firing battle droids to grab his lightsaber, spins and turns and cuts them down, and then uses the Force to toss a super battle droid at the terminal controls. He checks to see if Amidala is all right. She's shaken, but will survive.

Elsewhere in the compound, Obi-Wan races to the bomb assembly area, while Ahsoka holds off the droids. He and his squad find the room filled with rows of inactive explosives. The bombs suddenly light up as Dr. Vindi remotely activates them. Kenobi surmises that Skywalker didn't capture the doctor. He also notices an empty slot amid the rows of bombs -- one of the explosives is missing.

Anakin orders Ahsoka to search for the wayward explosive. Padmé remembers Dr. Vindi's assistant, and correctly guesses that it's the keeper of the missing bomb. The teams split up to find the droid.

Anakin finds Dr. Vindi's secret hangar and cuts through his battle droid guards. To distract Anakin, Vindi throws a vial of the virus out the blast door. Anakin leaps to catch it while Vindi shuts the door behind the Jedi. Vindi raises the landing platform so he can escape in his shuttle. Anakin begins to cut through the door, and radios to Obi-Wan for help.

Padmé and Jar Jar discover a room filled with a small grove of trees. Inside, Dr. Vindi's droid cowers. Padmé corners it, and it makes a break for it. Jar Jar tackles the droid, dropping the bomb which Padmé catches. She radios her success to Ahsoka, who dispatches the bomb squad to Padmé's location.

Anakin and Obi-Wan cut their way into the hangar bay. Vindi drops a trio of vials from his rising platform, forcing Kenobi to break pursuit to catch them and make sure they don't break.

The hangar launch chute opens, splitting the swamp floor beneath Peppi Bow's feet. Daylight streams into the hangar. Anakin leaps to the top of the platform and holds his blade at Vindi. Once more he tries to drop a vial, but he is tackled by Peppi, who knocks him down with her electropole. Vindi lies prostrate on the landing platform surface, cackling with glee because his timed bombs are ready to erupt. But there is no explosion.

The clone troopers have deactivated all the bombs.

Trivia & Details

  • When Neeyutnee demands that Padmé inform the Senate of the possible invasion, Amidala instantly answers that they will need more proof. She is clearly remembering the events of Episode I, when a huge invasion of the planet only managed to prompt the motion of an independent fact-finding commission be sent to Naboo to ascertain the truth.

  • The original script had the evidence of plague be at the very start of the episode, moving downstream and affecting an entire Gungan village. Some remnants of this order of events remain in the finished episode. Notably, the tense relationship with the Gungans that Padmé cites stems from this version of the story.

  • The script originally called for the tactical droid to be a tripedal medical droid. This is why C-3PO says to it, "We all want to hear your tale of medical heroics."

  • The laboratory may have been built over a decade ago during the original Naboo invasion.

  • According to the script, the clones units dispatched to help invade the laboratory are Wildfire, Snow Wolves and Calm Tree.

  • Originally the "rabbit droid" took the bomb and left in Act II never to be seen again. Padmé found the missing bomb in the greenhouse room, left hidden for no apparent reason. The addition of the scampering droid with the bomb was done during editorial, not only for story logic but to add the fun beat where it startles Padmé.

  • The Naboo guards were a late addition, taxing the asset allocation budget for the episode. Consequently, the crew only produced a single guard, who was cheated in camera angles to keep the twin guards from being too noticeable.

  • In recreating the Theed hangar, the crew discovered that the Naboo starfighter's tails go through the hangar walls in order to fit into their stalls. Dave Filoni consulted with Episode I Visual Effects Supervisor John Knoll about this, and Knoll confirmed they had the same problem in The Phantom Menace.

  • In the script, the plants in the greenhouse room where Padmé finds the missing bomb were originally "tea leaf plants". In the end, Giancarlo Volpi and Dave Filoni decided it was better if the plants seemed more like they were involved in the creation of the Blue Shadow Virus somehow, hence their blue color.

  • The crew nicknamed the underground laboratory hallway fights the "disco hallways." Their tube-like design was inspired by the hallway Luke Skywalker explores in Cloud City in The Empire Strikes Back.

Memorable Quotes

"Unless you want to become a box of spare parts, you'll tell us where that lab is." -- Captain Typho

"I'm having a bad feeling about this. With your permission, Senator Padmé, I would like to shut down before I get sensory overload. " -- C-3PO

"Mesa luven! Is berry berry good tongue-grabben." -- Jar Jar Binks, describing slug-beetles.

"I suppose one could never have too many lab rats. Please, escort our guests inside." -- Dr. Nuvo Vindi

"Wonderful specimins! What's a life-form like you doing in a swamp like this?" -- Dr. Nuvo Vindi

"Meanwhile, as we speak, thousands and thousands of so-called 'superior" lifeforms are spreading their disease of war throughout the galaxy! Perhaps they are the ones who should be eradicated?" -- Dr. Nuvo Vindi

- "There's a good chance we're about to destroy all life on this planet, including the Senator's, so, yes. I'm on edge. Why aren't you?"
- "I'm better at hiding it." -- Anakin Skywalker and Obi-Wan Kenobi

"Oops. What happened?" -- Dr. Nuvo Vindi, his plot being foiled.

- "Senator Padmé can be very hard to stop once she has made up her mind."
- "Good point. I know what you mean." -- Captain Typho and Anakin Skywalker

"She's right next to me. I'm okay too, thanks for asking." -- Ahsoka Tano responding to Anakin's queries about Padmé.

Related Article Links

Video Preview A short video introduction to this episode.

Clone Wars:The Valley Captain Typho investigates a new threat to Naboo in this exclusive webcomic.

Video Commentary Director Dave Filoni discusses how the production crew is now capable of creating more new character models than ever before.

Keywords: Television, Episode Guide

Filed under: The Clone Wars

Databank: Naboo
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