1: ALAS1 aminolevulinate, delta-, synthase 1 [ Homo sapiens ]

GeneID: 211 updated 5-Mar-2010

[Top][Help]Summary

Official Symbol
ALAS1provided by HGNC
Official Full Name
aminolevulinate, delta-, synthase 1provided by HGNC
Primary source
HGNC:396
See related
Ensembl:ENSG00000023330; HPRD:00505; MIM:125290
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALAS; MIG4; ALAS3; ALASH; ALAS1
Summary
Delta-aminolevulinate synthase (ALAS; EC 2.3.1.37) catalyzes the condensation of glycine with succinyl-CoA to form delta-aminolevulinic acid. This nuclear-encoded mitochondrial enzyme is the first and rate-limiting enzyme in the mammalian heme biosynthetic pathway. There are 2 tissue-specific isozymes: a housekeeping enzyme encoded by the ALAS1 gene and an erythroid tissue-specific enzyme encoded by ALAS2 (MIM 301300).[supplied by OMIM]

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: 3;Â?Location: 3p21.1See ALAS1 in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. In this study, we show significant reductions of the rate-limiting enzymes involved in heme biosynthesis, ALAS1 in the postmortem cortex of Alzheimer's disease subjects, providing additional evidence of abnormal heme homeostasis in Alzheimer's disease.
PubMed 2. Differential regulation of human ALAS1 mRNA and protein levels by heme and cobalt protoporphyrin.
PubMed 3. role of PPARalpha in the regulation of human ALAS1 and of five additional genes of the pathway, consequently leading to increased heme synthesis.
PubMed 4. Expression of candidate genes HPRT1 and ALAS1 in malignant and non-malignant prostate tissue samples after microdissection.
PubMed 5. REVIEW: mechanisms involving ALAS deficiency, point mutations, post translational processing, and complex formation with succinyl CoA synthetase subunit B in the pathogenesis of hereditary sideroblastic anemia.
PubMed 6. REVIEW:active site and mechanistic analysis, protein folding, structure and function.
PubMed 7. in the liver of Acute liver failure patients, there may be an increase in free heme concentration which down-regulating ALAS1 gene expression
PubMed 8. ALAS gene expression is regulated by Hepatic nuclear factor 3 and nuclear factor 1
PubMed 9. ALAS expression is regulated by AP-1 complex through sequestration of cAMP-response element protein (CRE)-binding protein (CBP) coactivator in human cells
PubMed 10. 5-aminolevulinate synthase gene repression by the potent tumor promoter, TPA, involves multiple signal transduction pathways
PubMed 11. First described frameshift ALAS2 mutation, CD506-507 (-C).
PubMed 12. Alternative splicing of human ALAS1 generates two mRNAs with different 5'-UTRs: a major one, where exon 1B is omitted, and a minor form containing exon 1B.

[Top][Help]Interactions

Description ..........
Â?Â?Product Interactant Other Gene Complex Source PubsÂ?Â?Â?Â?Â?Â?Â?Â?Â?Â?
Â?
Â?Â?P13196Â?Â? O95630Â?Â? STAMBP Â?Â? Â? HPRD Â?Â? PubMed

[Top][Help]General gene information

Markers

RH69932(e-PCR)
Links: UniSTS:3329
RH93452(e-PCR)
Links: UniSTS:90989
RH77906(e-PCR)
Links: UniSTS:40822
D2S1587E(e-PCR)
Links: UniSTS:150671
GDB:273584(e-PCR)
Links: UniSTS:156360
SHGC-31564(e-PCR)
Links: UniSTS:70364

Homology

Homologs of the ALAS1 gene The ALAS1 gene is conserved in chimpanzee, dog, cow, mouse, chicken, zebrafish, fruit fly, and mosquito.


Map Viewer (Mouse)

Pathways

KEGG pathway: Glycine, serine and threonine metabolism
00260
KEGG pathway: Metabolic pathways
01100
KEGG pathway: Porphyrin and chlorophyll metabolism
00860
Reactome Event:Metabolism of porphyrins
REACT_9431

Gene Ontology Provided by GOA

Process Evidence
biosynthetic process IEA Â?Â?
heme biosynthetic process IEA Â?Â?
tetrapyrrole biosynthetic process IEA Â?Â?
Component Evidence
mitochondrial matrix IEA Â?Â?
mitochondrion IEA Â?Â?

[Top][Help]General protein information

Preferred Names
5-aminolevulinate synthase, nonspecific, mitochondrial
Names
5-aminolevulinate synthase, nonspecific, mitochondrial
ALAS-H
delta-ALA synthase 1
migration-inducing protein 4
5-aminolevulinic acid synthase 1
delta-aminolevulinate synthase 1
NP_000679.1
EC 2.3.1.37
NP_954635.1
EC 2.3.1.37

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_000688.4 → NP_000679.1 �5-aminolevulinate synthase, nonspecific, mitochondrial precursor

    Source sequence(s)
    AU279391,BC011798,CD014147,X56351
    Consensus CDS
    CCDS2847.1
    UniProtKB/Swiss-Prot
    P13196
    UniProtKB/TrEMBL
    Q5JAM2
    Related Ensembl
    ENSP00000309259, ENSP00000378416, ENST00000310271, ENST00000394965
    Conserved Domains (3) summary
    COG0156
    Location:197 – 590
    Blast Score: 926
    BioF; 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
    cd06454
    Location:243 – 598
    Blast Score: 1249
    KBL_like; KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-...
    pfam09029
    Location:1 – 139
    Blast Score: 232
    Preseq_ALAS; 5-aminolevulinate synthase presequence
  2. NM_199166.1 → NP_954635.1 �5-aminolevulinate synthase, nonspecific, mitochondrial precursor

    Source sequence(s)
    BM546974,BU173391,X56351
    Consensus CDS
    CCDS2847.1
    UniProtKB/Swiss-Prot
    P13196
    UniProtKB/TrEMBL
    Q5JAM2
    Related Ensembl
    ENSP00000309259, ENSP00000378416, ENST00000310271, ENST00000394965
    Conserved Domains (3) summary
    COG0156
    Location:197 – 590
    Blast Score: 926
    BioF; 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
    cd06454
    Location:243 – 598
    Blast Score: 1249
    KBL_like; KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-...
    pfam09029
    Location:1 – 139
    Blast Score: 232
    Preseq_ALAS; 5-aminolevulinate synthase presequence

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000003.11

    Range
    52232115..52248342
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_022517.18Â?

    Range
    52172115..52188342
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000046.1

    Range
    52211427..52227654
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_921651.1Â?

    Range
    52211427..52227654
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000135.1

    Range
    52294308..52310540, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838877.2Â?

    Range
    13957121..13973353, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

Â?Â?Nucleotide Â?Â?Protein
Â?Â?genomic Â?Â?AC097637.2Â?Â?(173888..190115) Â?Â?None
Â?Â?genomic Â?Â?CH471055.1 Â?Â?EAW65188.1
Â?Â?Â?Â? Â?Â?EAW65189.1
Â?Â?Â?Â? Â?Â?EAW65190.1
Â?Â?mRNA Â?Â?AB063322.1 Â?Â?BAB93514.1
Â?Â?mRNA Â?Â?AK293190.1 Â?Â?BAG56730.1
Â?Â?mRNA Â?Â?AK300993.1 Â?Â?BAG62612.1
Â?Â?mRNA Â?Â?AK312566.1 Â?Â?BAG35461.1
Â?Â?mRNA Â?Â?AU279391.1 Â?Â?None
Â?Â?mRNA Â?Â?AY260745.1 Â?Â?AAP94018.1
Â?Â?mRNA Â?Â?BC011798.2 Â?Â?AAH11798.1
Â?Â?mRNA Â?Â?BM546974.1 Â?Â?None
Â?Â?mRNA Â?Â?BU173391.1 Â?Â?None
Â?Â?mRNA Â?Â?CD014147.1 Â?Â?None
Â?Â?mRNA Â?Â?CR590706.1 Â?Â?None
Â?Â?mRNA Â?Â?CR596499.1 Â?Â?None
Â?Â?mRNA Â?Â?CR606089.1 Â?Â?None
Â?Â?mRNA Â?Â?X56351.1 Â?Â?CAA39794.1
Â?Â?mRNA Â?Â?Y00451.1 Â?Â?CAA68506.1
Protein Accession Â?Â?Links
P13196.2 Â?Â?GenPept Â?Â?UniProtKB/Swiss-Prot:P13196
Q5JAM2 Â?Â?GenPept Â?Â?UniProtKB/TrEMBL:Q5JAM2

[Top][Help]Additional Links