GO Slimmer

Query set

The Slimmer tool allows you to map the granular annotations of the query set of genes to one or more high-level, broader parent terms referred to as GO Slim terms. This is possible with GO because there are parent:child relationships recorded between granular terms and more general parent (ie. GO slim) terms. The Slimmer tool can be useful in reporting the results of GO annotations of a genome, analyzing the results of microarray expression data, or cDNA collection using a high level view of the three ontologies.

More information about this tool can be found in the manual.

help!

Enter your gene symbols and ids below (symbols, synonyms, or accessions):
If you do not input a list, the database filter selected will be used instead.

OR :

Available filters help!

help!

Enter GO ids (such as GO:0005764).

OR use a pre-existing GO slim set:

OR :

[Display advanced result options]

Choose the type of your results help!

gene product counts for each slim term
gene product counts for each slim term, with links to the gene products included after the count
gene association file containing the most pertinent GO slim accessions
mapping file for the terms associated with your gene product list
mapping file for every term in the full ontology, showing both the most pertinent slim term and all slim terms that are ancestors (large and time-consuming)

Choose the format of your results help!

html page
tab-delimited file
xml file (unstable format)

Bucket terms help!

  (EXPERIMENTAL)


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