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JGI sequenced data

Non-public resource

  • Restricted to view icon - Non-public resource. Access can be restricted. For access information please email to Principal investigator


  • Group Genomes icon - Proposal/Group of Projects
  • Group Fungi Genomes icon - Group of Fungal Genomes
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    New on the portal:

    KBase is a platform enabling systems biology research and comparative functional genomics of microbes and plants while promoting the sharing of results and methods with other scientists.
    Microbial genome reads and assemblies can be transferred directly from the JGI Genome Portal to KBase for assembly, annotation, metabolic modeling, and more using the Push to KBase feature. Any data you transfer to KBase is private unless you choose to share it.

    Learn more about KBase.

    JGI provides a variety of ways to download different data
    • Download with web UI
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    • Download with API

    Learn More about Download Options

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    Tree of Life Alphaproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Epsilonproteobacteria Chlamydiae/Verrucomicrobia Dictyoglomi Planctomycetes Fusobacteria Synergistetes Deferribacteres Spirochaetes Deinococcus-Thermus Thermotogae Chloroflexi Aquificae Cyanobacteria Actinobacteria Acidobacteria Firmicutes Bacteroidetes Chlorobi Fibrobacteres Thermodesulfobacteria Korarchaeota Crenarchaeota Euryarchaeota Cryptophyta Haptophyta Rhizaria Heterokonta Heterolobosea Viridiplantae Choanozoa Metazoa Fungi Amoebozoa Engineered metagenomes Host-Associated metagenomes Soil metagenomes Thermal Springs metagenomes Marine metagenomes Freshwater metagenomes
    "Tree of Life" drawing by Leila Hornick, copyright 2005
    TREE OF LIFE: To use the tree navigation: click a branch name and select the name of the organism of your interest.
    icon representing GOLDGenomes OnLine Database (GOLD) - a resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.
    icon representing IMGIntegrated Microbial Genomes (IMG) and Metagenomes (IMG/M) - resources for comparative analysis and annotation of all publicly available genomes.
    icon representing Mycocosm Mycocosm - the Fungal Genomics Resource. Provides access to the annotated fungal genomes and tools for their analysis.
    icon representing PhytozomePhytozome - a comparative hub for green plant genomes and gene family data and analysis.
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    Visit JGI Data Management & Analysis Systems for comparative analysis and annotation of all publicly available genomes.


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