UniProtKB - Q9Y624 (JAM1_HUMAN)
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Protein
Junctional adhesion molecule A
Gene
F11R
Organism
Homo sapiens (Human)
Status
Functioni
Seems to play a role in epithelial tight junction formation. Appears early in primordial forms of cell junctions and recruits PARD3 (PubMed:11489913). The association of the PARD6-PARD3 complex may prevent the interaction of PARD3 with JAM1, thereby preventing tight junction assembly (By similarity). Plays a role in regulating monocyte transmigration involved in integrity of epithelial barrier (By similarity). Ligand for integrin alpha-L/beta-2 involved in memory T-cell and neutrophil transmigration (PubMed:11812992). Involved in platelet activation (PubMed:10753840).By similarity3 Publications
(Microbial infection) Acts as a receptor for Mammalian reovirus sigma-1.1 Publication
(Microbial infection) Acts as a receptor for Human Rotavirus strain Wa.1 Publication
GO - Molecular functioni
- cadherin binding Source: BHF-UCL
- PDZ domain binding Source: UniProtKB
- virus receptor activity Source: UniProtKB-KW
GO - Biological processi
- actomyosin structure organization Source: UniProtKB
- bicellular tight junction assembly Source: Reactome
- cell adhesion Source: Ensembl
- establishment of endothelial intestinal barrier Source: UniProtKB
- establishment of protein localization to plasma membrane Source: UniProtKB
- extracellular matrix organization Source: Reactome
- inflammatory response Source: ProtInc
- intestinal absorption Source: UniProtKB
- leukocyte migration Source: Reactome
- negative regulation of GTPase activity Source: UniProtKB
- positive regulation of blood pressure Source: Ensembl
- positive regulation of GTPase activity Source: UniProtKB
- regulation of actin cytoskeleton reorganization Source: UniProtKB
- regulation of cytokine production Source: Ensembl
- regulation of membrane permeability Source: UniProtKB
- response to radiation Source: Ensembl
- transforming growth factor beta receptor signaling pathway Source: Reactome
Keywordsi
Molecular function | Host cell receptor for virus entry, Receptor |
Biological process | Host-virus interaction |
Enzyme and pathway databases
Reactomei | R-HSA-202733. Cell surface interactions at the vascular wall. R-HSA-216083. Integrin cell surface interactions. R-HSA-2173791. TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition). R-HSA-420029. Tight junction interactions. |
SIGNORi | Q9Y624. |
Names & Taxonomyi
Protein namesi | Recommended name: Junctional adhesion molecule AShort name: JAM-A Alternative name(s): Junctional adhesion molecule 1 Short name: JAM-1 Platelet F11 receptor Platelet adhesion molecule 1 Short name: PAM-1 CD_antigen: CD321 |
Gene namesi | Name:F11R Synonyms:JAM1, JCAM ORF Names:UNQ264/PRO301 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:14685. F11R. |
Subcellular locationi
- Cell junction › tight junction 1 Publication
- Cell membrane 1 Publication; Single-pass type I membrane protein 1 Publication
Note: Localized at tight junctions of both epithelial and endothelial cells.1 Publication
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 28 – 238 | ExtracellularSequence analysisAdd BLAST | 211 | |
Transmembranei | 239 – 259 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 260 – 299 | CytoplasmicSequence analysisAdd BLAST | 40 |
GO - Cellular componenti
- bicellular tight junction Source: UniProtKB
- cell-cell junction Source: ProtInc
- cell junction Source: Reactome
- cytoplasmic vesicle Source: Ensembl
- extracellular exosome Source: UniProtKB
- integral component of membrane Source: UniProtKB-KW
- plasma membrane Source: LIFEdb
- slit diaphragm Source: Ensembl
Keywords - Cellular componenti
Cell junction, Cell membrane, Membrane, Tight junctionPathology & Biotechi
Organism-specific databases
DisGeNETi | 50848. |
OpenTargetsi | ENSG00000158769. |
PharmGKBi | PA29991. |
Polymorphism and mutation databases
BioMutai | F11R. |
DMDMi | 10720061. |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 27 | Combined sources3 PublicationsAdd BLAST | 27 | |
ChainiPRO_0000015066 | 28 – 299 | Junctional adhesion molecule AAdd BLAST | 272 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Disulfide bondi | 50 ↔ 109 | 1 Publication | ||
Disulfide bondi | 153 ↔ 212 | 1 Publication | ||
Glycosylationi | 185 | N-linked (GlcNAc...) asparagine1 Publication | 1 | |
Glycosylationi | 191 | N-linked (GlcNAc...) asparagine1 Publication | 1 | |
Modified residuei | 281 | PhosphoserineCombined sources | 1 | |
Modified residuei | 284 | PhosphoserineCombined sources | 1 | |
Modified residuei | 287 | PhosphoserineCombined sources | 1 |
Post-translational modificationi
N-glycosylated.2 Publications
Keywords - PTMi
Disulfide bond, Glycoprotein, PhosphoproteinProteomic databases
EPDi | Q9Y624. |
PaxDbi | Q9Y624. |
PeptideAtlasi | Q9Y624. |
PRIDEi | Q9Y624. |
PTM databases
iPTMneti | Q9Y624. |
PhosphoSitePlusi | Q9Y624. |
SwissPalmi | Q9Y624. |
Expressioni
Tissue specificityi
Expressed in endothelium, epithelium and leukocytes (at protein level).1 Publication
Gene expression databases
Bgeei | ENSG00000158769. |
CleanExi | HS_F11R. |
ExpressionAtlasi | Q9Y624. baseline and differential. |
Genevisiblei | Q9Y624. HS. |
Organism-specific databases
HPAi | CAB004671. HPA043616. HPA061700. |
Interactioni
Subunit structurei
Interacts with the ninth PDZ domain of MPDZ (PubMed:11489913). Interacts with the first PDZ domain of PARD3 (PubMed:11489913). The association between PARD3 and PARD6B probably disrupts this interaction (By similarity). Interacts with ITGAL (via I-domain) (PubMed:15528364).By similarity2 Publications
(Microbial infection) Interacts with Mammalian reovirus sigma-1 capsid protein.1 Publication
(Microbial infection) Interacts with Human Rotavirus strain Wa vp4 capsid protein.1 Publication
Binary interactionsi
GO - Molecular functioni
- cadherin binding Source: BHF-UCL
- PDZ domain binding Source: UniProtKB
Protein-protein interaction databases
BioGridi | 119153. 16 interactors. |
IntActi | Q9Y624. 7 interactors. |
MINTi | MINT-154235. |
STRINGi | 9606.ENSP00000289779. |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more detailsFeature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Beta strandi | 30 – 32 | Combined sources | 3 | |
Beta strandi | 36 – 41 | Combined sources | 6 | |
Beta strandi | 47 – 49 | Combined sources | 3 | |
Beta strandi | 51 – 54 | Combined sources | 4 | |
Beta strandi | 56 – 66 | Combined sources | 11 | |
Beta strandi | 69 – 75 | Combined sources | 7 | |
Beta strandi | 76 – 79 | Combined sources | 4 | |
Turni | 81 – 86 | Combined sources | 6 | |
Beta strandi | 88 – 90 | Combined sources | 3 | |
Beta strandi | 93 – 95 | Combined sources | 3 | |
Helixi | 101 – 103 | Combined sources | 3 | |
Beta strandi | 105 – 113 | Combined sources | 9 | |
Beta strandi | 123 – 125 | Combined sources | 3 | |
Beta strandi | 128 – 130 | Combined sources | 3 | |
Beta strandi | 140 – 144 | Combined sources | 5 | |
Beta strandi | 149 – 151 | Combined sources | 3 | |
Beta strandi | 163 – 168 | Combined sources | 6 | |
Beta strandi | 177 – 182 | Combined sources | 6 | |
Turni | 192 – 194 | Combined sources | 3 | |
Beta strandi | 197 – 201 | Combined sources | 5 | |
Helixi | 204 – 206 | Combined sources | 3 | |
Beta strandi | 210 – 215 | Combined sources | 6 | |
Beta strandi | 217 – 219 | Combined sources | 3 | |
Beta strandi | 230 – 232 | Combined sources | 3 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1NBQ | X-ray | 2.90 | A/B | 27-233 | [»] | |
3EOY | X-ray | 3.40 | G/H/I/J/K/L | 28-129 | [»] | |
3TSZ | X-ray | 2.50 | B | 288-299 | [»] | |
4ODB | X-ray | 3.20 | D/E/F | 28-129 | [»] | |
ProteinModelPortali | Q9Y624. | |||||
SMRi | Q9Y624. | |||||
ModBasei | Search... | |||||
MobiDBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9Y624. |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 28 – 125 | Ig-like V-type 1Add BLAST | 98 | |
Domaini | 135 – 228 | Ig-like V-type 2Add BLAST | 94 |
Domaini
The Ig-like V-type 2 domain is necessary and sufficient for interaction with integrin alpha-L/beta-2.1 Publication
Sequence similaritiesi
Belongs to the immunoglobulin superfamily.Curated
Keywords - Domaini
Immunoglobulin domain, Repeat, Signal, Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | ENOG410IWUE. Eukaryota. ENOG410YHHV. LUCA. |
GeneTreei | ENSGT00730000110678. |
HOVERGENi | HBG000518. |
InParanoidi | Q9Y624. |
KOi | K06089. |
OMAi | NRAFSNS. |
OrthoDBi | EOG091G05PI. |
PhylomeDBi | Q9Y624. |
TreeFami | TF343984. |
Family and domain databases
Gene3Di | 2.60.40.10. 2 hits. |
InterProi | View protein in InterPro IPR007110. Ig-like_dom. IPR013783. Ig-like_fold. IPR003599. Ig_sub. IPR003598. Ig_sub2. IPR013106. Ig_V-set. |
Pfami | View protein in Pfam PF07686. V-set. 1 hit. |
SMARTi | View protein in SMART SM00409. IG. 2 hits. SM00408. IGc2. 2 hits. SM00406. IGv. 1 hit. |
SUPFAMi | SSF48726. SSF48726. 2 hits. |
PROSITEi | View protein in PROSITE PS50835. IG_LIKE. 2 hits. |
s (2)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9Y624-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
10 20 30 40 50
MGTKAQVERK LLCLFILAIL LCSLALGSVT VHSSEPEVRI PENNPVKLSC
60 70 80 90 100
AYSGFSSPRV EWKFDQGDTT RLVCYNNKIT ASYEDRVTFL PTGITFKSVT
110 120 130 140 150
REDTGTYTCM VSEEGGNSYG EVKVKLIVLV PPSKPTVNIP SSATIGNRAV
160 170 180 190 200
LTCSEQDGSP PSEYTWFKDG IVMPTNPKST RAFSNSSYVL NPTTGELVFD
210 220 230 240 250
PLSASDTGEY SCEARNGYGT PMTSNAVRME AVERNVGVIV AAVLVTLILL
260 270 280 290
GILVFGIWFA YSRGHFDRTK KGTSSKKVIY SQPSARSEGE FKQTSSFLV
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_056218 | 81 – 129 | Missing in isoform 2. 1 PublicationAdd BLAST | 49 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF111713 mRNA. Translation: AAD42050.1. AF207907 mRNA. Translation: AAF22829.1. AF172398 mRNA. Translation: AAD48877.1. AL136649 mRNA. Translation: CAB66584.1. AY358896 mRNA. Translation: AAQ89255.1. AK304412 mRNA. Translation: BAH14177.1. AL591806 Genomic DNA. No translation available. BC001533 mRNA. Translation: AAH01533.1. |
CCDSi | CCDS1213.1. [Q9Y624-1] |
PIRi | A59406. S56749. |
RefSeqi | NP_001335020.1. NM_001348091.1. [Q9Y624-2] NP_058642.1. NM_016946.5. [Q9Y624-1] |
UniGenei | Hs.517293. |
Genome annotation databases
Ensembli | ENST00000368026; ENSP00000357005; ENSG00000158769. [Q9Y624-1] ENST00000537746; ENSP00000440812; ENSG00000158769. [Q9Y624-2] |
GeneIDi | 50848. |
KEGGi | hsa:50848. |
UCSCi | uc009wtt.4. human. [Q9Y624-1] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:100% | UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry. |
90% | UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence). |
50% | UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster. |
Entry informationi
Entry namei | JAM1_HUMAN | |
Accessioni | Q9Y624Primary (citable) accession number: Q9Y624 Secondary accession number(s): B7Z941 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 1, 2000 |
Last sequence update: | November 1, 1999 | |
Last modified: | July 5, 2017 | |
This is version 179 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Complete proteome, Direct protein sequencing, Reference proteomeDocuments
- Human cell differentiation molecules
CD nomenclature of surface proteins of human leucocytes and list of entries - Human chromosome 1
Human chromosome 1: entries, gene names and cross-references to MIM - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families